1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g05540.1

LOC_Os03g05540.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007800 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007800_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g05540.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g05540.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_382
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_16


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 156 345
IPR011990 TPR-like_helical_dom_sf Gene3D 53 382
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 64 180
IPR011990 TPR-like_helical_dom_sf Gene3D 391 522
IPR019734 TPR_repeat SMART 106 139
IPR019734 TPR_repeat SMART 480 513
IPR019734 TPR_repeat SMART 235 268
IPR019734 TPR_repeat SMART 396 429
IPR019734 TPR_repeat SMART 275 308
IPR019734 TPR_repeat SMART 57 90
IPR019734 TPR_repeat SMART 151 184
IPR019734 TPR_repeat SMART 438 471
IPR019734 TPR_repeat SMART 313 346
IPR019734 TPR_repeat SMART 193 226
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 401 512

No CAZYmes available for this sequence

No external refs found!