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  5. LOC_Os03g05830.1

LOC_Os03g05830.1


Description : Splicing factor, CC1-like


Gene families : OG_01_0001278 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001278_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g05830.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g05830.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_321
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_20


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 184 275
IPR000504 RRM_dom Pfam 289 359
IPR000504 RRM_dom Pfam 527 579
IPR000504 RRM_dom Pfam 196 259
IPR000504 RRM_dom ProSiteProfiles 508 586
IPR000504 RRM_dom SMART 288 361
IPR000504 RRM_dom SMART 504 582
IPR000504 RRM_dom SMART 191 263
IPR035979 RBD_domain_sf SUPERFAMILY 500 586
IPR035979 RBD_domain_sf SUPERFAMILY 278 364
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 275 363
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 118 274
IPR029123 RBM39_linker Pfam 413 521
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 498 595
IPR000504 RRM_dom ProSiteProfiles 190 267
IPR000504 RRM_dom ProSiteProfiles 287 365
IPR006509 RBM39_SF TIGRFAM 77 362

No CAZYmes available for this sequence

No external refs found!