LOC_Os03g06060.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g06060.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g06060.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_173
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_144

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007118	Expan_Lol_pI	PRINTS	22	37
IPR007118	Expan_Lol_pI	PRINTS	182	196
IPR007118	Expan_Lol_pI	PRINTS	40	58
IPR007118	Expan_Lol_pI	PRINTS	62	80
IPR007118	Expan_Lol_pI	PRINTS	220	234
IPR007118	Expan_Lol_pI	PRINTS	128	144
IPR002963	Expansin	PANTHER	5	239
IPR009009	RlpA-like_DPBB	Pfam	59	135
IPR036908	RlpA-like_sf	Gene3D	13	140
IPR002963	Expansin	PRINTS	120	133
IPR002963	Expansin	PRINTS	144	156
IPR002963	Expansin	PRINTS	103	120
IPR002963	Expansin	PRINTS	156	177
IPR002963	Expansin	PRINTS	191	212
IPR002963	Expansin	PRINTS	53	67
IPR002963	Expansin	PRINTS	220	236
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	41	145
IPR007117	Expansin_CBD	ProSiteProfiles	155	234
IPR007112	Expansin/allergen_DPBB_dom	SMART	58	135
IPR036749	Expansin_CBD_sf	Gene3D	149	239
IPR036908	RlpA-like_sf	SUPERFAMILY	8	163
IPR007117	Expansin_CBD	Pfam	146	223
IPR036749	Expansin_CBD_sf	SUPERFAMILY	143	233

No CAZYmes available for this sequence

External Links

No external refs found!