LOC_Os03g06900.1

Description : topoisomerase 3alpha

Gene families : OG_01_0012444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012444_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g06900.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g06900.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_124
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_132

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	ISM	GOs from InterProScan
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006171	TOPRIM_domain	ProSiteProfiles	11	157
IPR003602	Topo_IA_DNA-bd_dom	SMART	297	527
IPR023406	Topo_IA_AS	ProSitePatterns	334	348
IPR013824	Topo_IA_cen_sub1	Gene3D	176	260
IPR013497	Topo_IA_cen	CDD	178	575
IPR013824	Topo_IA_cen_sub1	Gene3D	484	596
IPR013497	Topo_IA_cen	PRINTS	421	437
IPR013497	Topo_IA_cen	PRINTS	121	134
IPR013497	Topo_IA_cen	PRINTS	489	503
IPR013497	Topo_IA_cen	PRINTS	339	348
IPR013497	Topo_IA_cen	PRINTS	221	239
IPR003601	Topo_IA_2	SMART	150	251
IPR006171	TOPRIM_domain	Pfam	13	158
IPR013497	Topo_IA_cen	Pfam	175	475
IPR013497	Topo_IA_cen	Pfam	487	564
IPR034144	TOPRIM_TopoIII	CDD	11	171
IPR023405	Topo_IA_core_domain	SUPERFAMILY	12	574
IPR013826	Topo_IA_cen_sub3	Gene3D	305	435
IPR000380	Topo_IA	PANTHER	11	662
IPR006171	TOPRIM_domain	SMART	11	147

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g06900.1

Expression Profile

Co-expression Networks

Functional Annotation