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  5. LOC_Os03g07234.1

LOC_Os03g07234.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014034 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014034_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g07234.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g07234.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_149


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt TIGRFAM 315 348
IPR002885 Pentatricopeptide_rpt TIGRFAM 211 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 149 173
IPR002885 Pentatricopeptide_rpt TIGRFAM 180 210
IPR002885 Pentatricopeptide_rpt TIGRFAM 349 383
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 178 208
IPR002885 Pentatricopeptide_rpt Pfam 311 358
IPR002885 Pentatricopeptide_rpt Pfam 208 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 147 177
IPR011990 TPR-like_helical_dom_sf Gene3D 280 497
IPR011990 TPR-like_helical_dom_sf Gene3D 145 205
IPR011990 TPR-like_helical_dom_sf Gene3D 5 144
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 243
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 42 76
IPR002885 Pentatricopeptide_rpt Pfam 149 174
IPR002885 Pentatricopeptide_rpt Pfam 44 73
IPR011990 TPR-like_helical_dom_sf Gene3D 206 278
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 284 470
IPR002885 Pentatricopeptide_rpt Pfam 380 411
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 312 346

No CAZYmes available for this sequence

No external refs found!