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  5. LOC_Os03g08830.1

LOC_Os03g08830.1


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0006256 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006256_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g08830.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g08830.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_229
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_533


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 405 484
IPR001680 WD40_rpt ProSiteProfiles 664 695
IPR011990 TPR-like_helical_dom_sf Gene3D 372 516
IPR045151 DCAF8 PANTHER 32 757
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 616 733
IPR001680 WD40_rpt Pfam 54 87
IPR001680 WD40_rpt Pfam 664 695
IPR001680 WD40_rpt SMART 48 87
IPR001680 WD40_rpt SMART 90 132
IPR001680 WD40_rpt SMART 278 316
IPR001680 WD40_rpt SMART 213 253
IPR001680 WD40_rpt SMART 145 185
IPR001680 WD40_rpt SMART 657 696
IPR001680 WD40_rpt SMART 611 654
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 40 371
IPR001680 WD40_rpt ProSiteProfiles 55 96
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 50 697

No CAZYmes available for this sequence

No external refs found!