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  5. LOC_Os03g09300.1

LOC_Os03g09300.1


Description : pumilio 1


Gene families : OG_01_0040836 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0040836_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g09300.1 No neighbors in network
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g09300.1
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_162


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016024 ARM-type_fold SUPERFAMILY 314 632
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 530 566
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 570 607
IPR001313 Pumilio_RNA-bd_rpt Pfam 536 565
IPR001313 Pumilio_RNA-bd_rpt Pfam 584 599
IPR001313 Pumilio_RNA-bd_rpt Pfam 502 530
IPR033133 PUM-HD ProSiteProfiles 311 635
IPR011989 ARM-like Gene3D 303 638
IPR001313 Pumilio_RNA-bd_rpt SMART 571 606
IPR001313 Pumilio_RNA-bd_rpt SMART 495 530
IPR001313 Pumilio_RNA-bd_rpt SMART 334 371
IPR001313 Pumilio_RNA-bd_rpt SMART 531 566

No CAZYmes available for this sequence

No external refs found!