LOC_Os03g10070.1

Description : plant-specific TFIIB-related protein

Gene families : OG_01_0008789 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008789_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g10070.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g10070.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_268
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_186

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017025	TBP-class protein binding	ISM	GOs from InterProScan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0070897	transcription preinitiation complex assembly	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140296	general transcription initiation factor binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000812	TFIIB	PRINTS	197	216
IPR000812	TFIIB	PRINTS	223	238
IPR000812	TFIIB	PRINTS	286	302
IPR000812	TFIIB	PRINTS	318	332
IPR000812	TFIIB	PRINTS	252	270
IPR036915	Cyclin-like_sf	SUPERFAMILY	250	348
IPR013763	Cyclin-like_dom	SMART	155	236
IPR013763	Cyclin-like_dom	SMART	251	332
IPR036915	Cyclin-like_sf	SUPERFAMILY	152	242
IPR013763	Cyclin-like_dom	CDD	253	331
IPR000812	TFIIB	PANTHER	6	507
IPR013763	Cyclin-like_dom	CDD	153	234
IPR013150	TFIIB_cyclin	Pfam	153	234
IPR013150	TFIIB_cyclin	Pfam	251	332

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g10070.1

Expression Profile

Co-expression Networks

Functional Annotation