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  5. LOC_Os03g10440.1

LOC_Os03g10440.1


Description : Glycosyl hydrolase family 10 protein


Gene families : OG_01_0015269 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015269_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g10440.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g10440.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_311
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_7


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0016798 hydrolase activity, acting on glycosyl bonds ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR044846 GH10 PANTHER 1 573
IPR001000 GH10_dom Pfam 227 486
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 215 521
IPR003305 CenC_carb-bd Pfam 51 167
IPR008979 Galactose-bd-like_sf SUPERFAMILY 48 182
IPR001000 GH10_dom ProSiteProfiles 220 515
IPR001000 GH10_dom SMART 263 514
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM22 131 575 4.6e-19 51 167
GH10 303 575 9.6e-58 227 490
No external refs found!