- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0015670 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015670_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g11670.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g11670.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_202 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_179 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 235 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 183 | 217 |
| IPR033443 | PPR_long | Pfam | 341 | 480 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 148 | 193 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 399 | 432 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 221 | 253 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 151 | 183 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 255 | 288 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 186 | 218 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 435 | 466 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 326 | 353 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 360 | 387 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 323 | 353 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 148 | 182 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 245 | 300 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 358 | 388 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 218 | 252 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 214 | 244 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 88 | 229 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 431 | 465 |
| IPR002625 | Smr_dom | SMART | 575 | 665 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 396 | 430 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 387 | 464 |
| IPR002625 | Smr_dom | ProSiteProfiles | 578 | 662 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 253 | 287 |
No CAZYmes available for this sequence
| No external refs found! |