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  5. LOC_Os03g12590.1

LOC_Os03g12590.1


Description : coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative


Gene families : OG_01_0000530 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000530_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g12590.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g12590.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_152
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_199


Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
CC GO:0030117 membrane coat ISM GOs from InterProScan
CC GO:0030126 COPI vesicle coat ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR037067 Coatomer_gsu_app_sf Gene3D 627 778
IPR032154 Coatomer_g_Cpla Pfam 780 894
IPR002553 Clathrin/coatomer_adapt-like_N Pfam 42 552
IPR009028 Coatomer/calthrin_app_sub_C SUPERFAMILY 782 894
IPR017106 Coatomer_gsu PIRSF 19 895
IPR012295 TBP_dom_sf Gene3D 779 895
IPR013040 Coatomer_gsu_app_Ig-like_dom Pfam 632 777
IPR011989 ARM-like Gene3D 35 327
IPR017106 Coatomer_gsu PANTHER 9 897
IPR013041 Clathrin_app_Ig-like_sf SUPERFAMILY 626 781
IPR016024 ARM-type_fold SUPERFAMILY 40 551

No CAZYmes available for this sequence

No external refs found!