LOC_Os03g12940.1

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG_01_0014396 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014396_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g12940.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g12940.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_299
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_29

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0046983	protein dimerization activity	ISM	GOs from InterProScan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036638	HLH_DNA-bd_sf	SUPERFAMILY	632	700
IPR001810	F-box_dom	SMART	343	383
IPR001810	F-box_dom	Pfam	342	384
IPR000626	Ubiquitin-like_dom	ProSiteProfiles	1	88
IPR011598	bHLH_dom	ProSiteProfiles	634	684
IPR001810	F-box_dom	ProSiteProfiles	337	383
IPR011598	bHLH_dom	SMART	640	690
IPR024097	bHLH_ZIP_TF	PANTHER	507	807
IPR011598	bHLH_dom	Pfam	637	685
IPR036638	HLH_DNA-bd_sf	Gene3D	631	710
IPR036047	F-box-like_dom_sf	SUPERFAMILY	337	392

No CAZYmes available for this sequence

External Links

No external refs found!