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  5. LOC_Os03g13170.1

LOC_Os03g13170.1


Description : ubiquitin extension protein 1


Gene families : OG_01_0000003 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000003_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g13170.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g13170.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_109
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_64


Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005840 ribosome ISM GOs from InterProScan
BP GO:0006412 translation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001975 Ribosomal_eL40_dom SMART 77 128
IPR001975 Ribosomal_eL40_dom Pfam 78 127
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 1 95
IPR019956 Ubiquitin_dom PRINTS 32 52
IPR019956 Ubiquitin_dom PRINTS 11 31
IPR019956 Ubiquitin_dom PRINTS 53 74
IPR019954 Ubiquitin_CS ProSitePatterns 27 52
IPR038587 Ribosomal_eL40_sf Gene3D 79 128
IPR000626 Ubiquitin-like_dom ProSiteProfiles 1 76
IPR000626 Ubiquitin-like_dom SMART 1 72
IPR000626 Ubiquitin-like_dom Pfam 3 74

No CAZYmes available for this sequence

No external refs found!