LOC_Os03g13800.1

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG_01_0004074 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004074_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g13800.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g13800.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_256
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0042254	ribosome biogenesis	ISM	GOs from InterProScan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1990904	ribonucleoprotein complex	ISM	GOs from InterProScan

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004037	Ribosomal_eL8-like_CS	ProSitePatterns	73	90
IPR004038	Ribosomal_eL8/eL30/eS12/Gad45	Pfam	22	111
IPR002415	H/ACA_rnp_Nhp2-like	PRINTS	8	21
IPR002415	H/ACA_rnp_Nhp2-like	PRINTS	38	48
IPR002415	H/ACA_rnp_Nhp2-like	PRINTS	21	36
IPR002415	H/ACA_rnp_Nhp2-like	PRINTS	82	94
IPR029064	Ribosomal_eL30-like_sf	Gene3D	1	128
IPR018492	Ribosomal_eL8/Nhp2	PRINTS	70	80
IPR018492	Ribosomal_eL8/Nhp2	PRINTS	80	94
IPR018492	Ribosomal_eL8/Nhp2	PRINTS	35	49
IPR018492	Ribosomal_eL8/Nhp2	PRINTS	54	67
IPR029064	Ribosomal_eL30-like_sf	SUPERFAMILY	6	126

No CAZYmes available for this sequence

External Links

No external refs found!