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  5. LOC_Os03g16450.1

LOC_Os03g16450.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0022400 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0022400_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g16450.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g16450.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_434
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_172


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt TIGRFAM 289 322
IPR002885 Pentatricopeptide_rpt TIGRFAM 151 185
IPR002885 Pentatricopeptide_rpt TIGRFAM 87 113
IPR002885 Pentatricopeptide_rpt TIGRFAM 116 149
IPR011990 TPR-like_helical_dom_sf Gene3D 167 248
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 149 183
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 114 148
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 82 112
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 290 446
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321
IPR002885 Pentatricopeptide_rpt Pfam 116 161
IPR002885 Pentatricopeptide_rpt Pfam 287 333
IPR002885 Pentatricopeptide_rpt Pfam 87 113
IPR002885 Pentatricopeptide_rpt Pfam 362 385
IPR002885 Pentatricopeptide_rpt Pfam 261 286
IPR011990 TPR-like_helical_dom_sf Gene3D 7 165
IPR011990 TPR-like_helical_dom_sf Gene3D 258 467

No CAZYmes available for this sequence

No external refs found!