LOC_Os03g16824.1

Description : plant U-box 13

Gene families : OG_01_0007934 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007934_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g16824.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g16824.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_48

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007166	cell surface receptor signaling pathway	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016024	ARM-type_fold	SUPERFAMILY	390	665
IPR011989	ARM-like	Gene3D	503	668
IPR003613	Ubox_domain	Pfam	294	364
IPR013083	Znf_RING/FYVE/PHD	Gene3D	294	367
IPR011989	ARM-like	Gene3D	372	502
IPR003613	Ubox_domain	SMART	297	360
IPR000225	Armadillo	Pfam	502	540
IPR000225	Armadillo	Pfam	419	458
IPR045210	RING-Ubox_PUB	CDD	298	340
IPR000225	Armadillo	ProSiteProfiles	430	472
IPR000225	Armadillo	SMART	501	541
IPR000225	Armadillo	SMART	583	623
IPR000225	Armadillo	SMART	419	459
IPR000225	Armadillo	SMART	460	500
IPR000225	Armadillo	SMART	542	582
IPR000225	Armadillo	SMART	377	417
IPR000225	Armadillo	SMART	627	667
IPR036537	Adaptor_Cbl_N_dom_sf	Gene3D	51	164
IPR003613	Ubox_domain	ProSiteProfiles	293	367

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g16824.1

Expression Profile

Co-expression Networks

Functional Annotation