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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0017318 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017318_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g17510.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g17510.1 | No neighbors in network |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_198 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 150 | 180 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 389 | 581 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 6 | 131 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 13 | 47 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 455 | 490 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 239 | 370 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 54 | 580 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 288 | 322 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 420 | 467 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 420 | 454 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 183 | 213 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 422 | 456 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 155 | 183 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 495 | 518 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 290 | 321 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 457 | 490 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 322 | 354 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 290 | 319 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 394 | 414 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 183 | 210 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 322 | 349 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 260 | 287 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 155 | 181 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 495 | 518 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 138 | 238 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 181 | 215 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 257 | 287 |
No CAZYmes available for this sequence
| No external refs found! |