LOC_Os03g17610.1

Description : Spo11/DNA topoisomerase VI, subunit A protein

Gene families : OG_01_0012982 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012982_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g17610.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g17610.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_39

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	ISM	GOs from InterProScan
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR034136	TOPRIM_Topo6A/Spo11	CDD	266	426
IPR036078	Spo11/TopoVI_A_sf	SUPERFAMILY	155	442
IPR002815	Spo11/TopoVI_A	PANTHER	70	442
IPR004085	TopoVI_A	Hamap	90	442
IPR004085	TopoVI_A	PRINTS	413	436
IPR004085	TopoVI_A	PRINTS	122	142
IPR004085	TopoVI_A	PRINTS	241	259
IPR004085	TopoVI_A	PRINTS	188	205
IPR004085	TopoVI_A	PRINTS	297	317
IPR002815	Spo11/TopoVI_A	PRINTS	194	211
IPR002815	Spo11/TopoVI_A	PRINTS	180	191
IPR002815	Spo11/TopoVI_A	PRINTS	212	227
IPR002815	Spo11/TopoVI_A	PRINTS	267	284
IPR002815	Spo11/TopoVI_A	PRINTS	323	339
IPR002815	Spo11/TopoVI_A	PRINTS	291	312
IPR013049	Spo11/TopoVI_A_N	Pfam	156	217
IPR036388	WH-like_DNA-bd_sf	Gene3D	84	220

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g17610.1

Expression Profile

Co-expression Networks

Functional Annotation