LOC_Os03g18210.1

Description : APRATAXIN-like

Gene families : OG_01_0008225 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008225_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g18210.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g18210.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_207
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_608

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004529	DNA exonuclease activity	None	Extended
MF	GO:0004536	DNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008409	5'-3' exonuclease activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016895	DNA exonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
MF	GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035312	5'-3' DNA exonuclease activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019808	Histidine_triad_CS	ProSitePatterns	649	667
IPR043472	Macro_dom-like	Gene3D	342	493
IPR002589	Macro_dom	SMART	361	551
IPR027417	P-loop_NTPase	Gene3D	19	197
IPR032566	Znf-C2HE	Pfam	685	739
IPR002589	Macro_dom	Pfam	384	456
IPR043472	Macro_dom-like	SUPERFAMILY	342	482
IPR036265	HIT-like_sf	Gene3D	560	744
IPR002589	Macro_dom	ProSiteProfiles	349	574
IPR036265	HIT-like_sf	SUPERFAMILY	557	723
IPR027417	P-loop_NTPase	SUPERFAMILY	36	187
IPR043472	Macro_dom-like	Gene3D	237	341
IPR043472	Macro_dom-like	SUPERFAMILY	249	344

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g18210.1

Expression Profile

Co-expression Networks

Functional Annotation