LOC_Os03g18950.1

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG_01_0026410 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0026410_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g18950.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g18950.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_182
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_236

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000571	Znf_CCCH	Pfam	384	407
IPR045877	ZFP36-like	PANTHER	178	449
IPR000571	Znf_CCCH	ProSiteProfiles	382	409
IPR000571	Znf_CCCH	ProSiteProfiles	419	447
IPR036855	Znf_CCCH_sf	SUPERFAMILY	382	413
IPR036855	Znf_CCCH_sf	SUPERFAMILY	416	445
IPR000571	Znf_CCCH	SMART	382	408
IPR000571	Znf_CCCH	SMART	419	446

No CAZYmes available for this sequence

External Links

No external refs found!