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  5. LOC_Os03g19340.1

LOC_Os03g19340.1


Description : WD40/YVTN repeat-like-containing domain;Bromodomain


Gene families : OG_01_0002327 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002327_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g19340.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g19340.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt SMART 152 192
IPR001680 WD40_rpt SMART 195 234
IPR001680 WD40_rpt SMART 339 435
IPR001680 WD40_rpt SMART 509 549
IPR001680 WD40_rpt SMART 467 506
IPR001680 WD40_rpt SMART 237 278
IPR001680 WD40_rpt SMART 289 327
IPR001680 WD40_rpt ProSiteProfiles 295 327
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 276 407
IPR001487 Bromodomain Pfam 1555 1612
IPR001680 WD40_rpt ProSiteProfiles 202 243
IPR019775 WD40_repeat_CS ProSitePatterns 536 550
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 167 589
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 156 275
IPR036427 Bromodomain-like_sf Gene3D 1550 1626
IPR036427 Bromodomain-like_sf SUPERFAMILY 1565 1624
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 409 607
IPR001680 WD40_rpt Pfam 298 327
IPR001680 WD40_rpt Pfam 198 233
IPR001680 WD40_rpt Pfam 168 191
IPR001680 WD40_rpt Pfam 510 549
IPR001680 WD40_rpt ProSiteProfiles 160 201

No CAZYmes available for this sequence

No external refs found!