LOC_Os03g19560.1

Description : high chlorophyll fluorescent 107

Gene families : OG_01_0010799 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010799_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g19560.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g19560.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_241
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_10

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006397	mRNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	309	491
IPR011990	TPR-like_helical_dom_sf	Gene3D	88	308
IPR003107	HAT	SMART	156	189
IPR003107	HAT	SMART	395	430
IPR003107	HAT	SMART	361	393
IPR003107	HAT	SMART	327	359
IPR003107	HAT	SMART	432	464
IPR003107	HAT	SMART	259	291
IPR003107	HAT	SMART	225	257
IPR003107	HAT	SMART	293	325
IPR003107	HAT	SMART	191	223
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	316	442
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	120	357
IPR019734	TPR_repeat	ProSiteProfiles	245	278
IPR019734	TPR_repeat	SMART	347	380
IPR019734	TPR_repeat	SMART	108	141
IPR019734	TPR_repeat	SMART	279	312
IPR019734	TPR_repeat	SMART	211	244
IPR019734	TPR_repeat	SMART	418	451
IPR019734	TPR_repeat	SMART	142	175
IPR019734	TPR_repeat	SMART	245	278
IPR019734	TPR_repeat	SMART	177	210
IPR019734	TPR_repeat	SMART	381	414
IPR044624	Mbb1-like	PANTHER	1	625

No CAZYmes available for this sequence

External Links

No external refs found!