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  5. LOC_Os03g20190.1

LOC_Os03g20190.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010049 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010049_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g20190.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g20190.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_330


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 173 207
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 47 81
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 157 472
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR011990 TPR-like_helical_dom_sf Gene3D 398 589
IPR011990 TPR-like_helical_dom_sf Gene3D 268 350
IPR002885 Pentatricopeptide_rpt Pfam 371 392
IPR002885 Pentatricopeptide_rpt Pfam 269 296
IPR002885 Pentatricopeptide_rpt Pfam 113 142
IPR002885 Pentatricopeptide_rpt Pfam 300 329
IPR002885 Pentatricopeptide_rpt Pfam 50 78
IPR002885 Pentatricopeptide_rpt Pfam 206 235
IPR002885 Pentatricopeptide_rpt Pfam 472 497
IPR002885 Pentatricopeptide_rpt Pfam 237 265
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 235 269
IPR011990 TPR-like_helical_dom_sf Gene3D 9 93
IPR011990 TPR-like_helical_dom_sf Gene3D 94 188
IPR011990 TPR-like_helical_dom_sf Gene3D 189 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 111 145
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 398 432
IPR032867 DYW_dom Pfam 571 696
IPR002885 Pentatricopeptide_rpt Pfam 397 444
IPR002885 Pentatricopeptide_rpt Pfam 172 205
IPR002885 Pentatricopeptide_rpt TIGRFAM 175 205
IPR002885 Pentatricopeptide_rpt TIGRFAM 269 297
IPR002885 Pentatricopeptide_rpt TIGRFAM 144 175
IPR002885 Pentatricopeptide_rpt TIGRFAM 206 235
IPR002885 Pentatricopeptide_rpt TIGRFAM 50 78
IPR002885 Pentatricopeptide_rpt TIGRFAM 237 264
IPR002885 Pentatricopeptide_rpt TIGRFAM 113 144
IPR002885 Pentatricopeptide_rpt TIGRFAM 400 433

No CAZYmes available for this sequence

No external refs found!