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  5. LOC_Os03g21020.1

LOC_Os03g21020.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0004783 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004783_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g21020.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g21020.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_299
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_33


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 373 467
IPR000504 RRM_dom SMART 44 113
IPR000504 RRM_dom SMART 379 456
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 27 134
IPR034147 RBM40_RRM1 CDD 44 115
IPR035979 RBD_domain_sf SUPERFAMILY 40 462
IPR045164 RBM41/RNPC3 PANTHER 31 467
IPR000504 RRM_dom Pfam 45 110
IPR000504 RRM_dom Pfam 380 452
IPR000504 RRM_dom ProSiteProfiles 378 460
IPR000504 RRM_dom ProSiteProfiles 43 117

No CAZYmes available for this sequence

No external refs found!