LOC_Os03g21160.2

Description : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0000359 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000359_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g21160.2
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g21160.2
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_142
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_71

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000571	Znf_CCCH	Pfam	233	253
IPR000571	Znf_CCCH	ProSiteProfiles	228	255
IPR000504	RRM_dom	ProSiteProfiles	359	435
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	307	449
IPR000571	Znf_CCCH	SMART	230	254
IPR000504	RRM_dom	SMART	360	430
IPR034365	AtC3H46-like_RRM	CDD	361	430
IPR000504	RRM_dom	Pfam	371	416
IPR035979	RBD_domain_sf	SUPERFAMILY	370	448

No CAZYmes available for this sequence

External Links

No external refs found!