LOC_Os03g21980.1

Description : Pseudouridine synthase family protein

Gene families : OG_01_0005309 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005309_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g21980.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g21980.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_266
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_99

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
MF	GO:0009982	pseudouridine synthase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0031119	tRNA pseudouridine synthesis	ISM	GOs from InterProScan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR020103	PsdUridine_synth_cat_dom_sf	SUPERFAMILY	337	421
IPR020094	TruA/RsuA/RluB/E/F_N	Gene3D	62	194
IPR020103	PsdUridine_synth_cat_dom_sf	SUPERFAMILY	71	246
IPR001406	PsdUridine_synth_TruA	PANTHER	51	509
IPR020095	PsdUridine_synth_TruA_C	Gene3D	196	486
IPR041708	PUS1/PUS2-like	CDD	76	421
IPR020097	PsdUridine_synth_TruA_a/b_dom	Pfam	332	418

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g21980.1

Expression Profile

Co-expression Networks

Functional Annotation