LOC_Os03g22740.1

Description : NOP56-like pre RNA processing ribonucleoprotein

Gene families : OG_01_0001165 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001165_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g22740.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g22740.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_19

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	None	Extended
MF	GO:0030515	snoRNA binding	ISM	GOs from InterProScan
CC	GO:0030684	preribosome	None	Extended
CC	GO:0031428	box C/D RNP complex	ISM	GOs from InterProScan
CC	GO:0032040	small-subunit processome	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR042239	Nop_C	Gene3D	286	398
IPR002687	Nop_dom	Pfam	166	395
IPR012976	NOSIC	SMART	159	211
IPR002687	Nop_dom	ProSiteProfiles	281	399
IPR045056	Nop56/Nop58	PANTHER	1	566
IPR036070	Nop_dom_sf	SUPERFAMILY	153	398
IPR012974	NOP58/56_N	Pfam	2	65

No CAZYmes available for this sequence

External Links

No external refs found!