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  5. LOC_Os03g23935.1

LOC_Os03g23935.1


Description : WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related


Gene families : OG_01_0007742 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007742_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g23935.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g23935.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_22


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 310 385
IPR036285 PRP4-like_sf Gene3D 70 154
IPR001680 WD40_rpt ProSiteProfiles 436 478
IPR036285 PRP4-like_sf SUPERFAMILY 80 133
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 221 510
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 217 309
IPR019775 WD40_repeat_CS ProSitePatterns 371 385
IPR001680 WD40_rpt ProSiteProfiles 310 351
IPR020472 G-protein_beta_WD-40_rep PRINTS 288 302
IPR020472 G-protein_beta_WD-40_rep PRINTS 413 427
IPR020472 G-protein_beta_WD-40_rep PRINTS 329 343
IPR001680 WD40_rpt SMART 387 426
IPR001680 WD40_rpt SMART 345 384
IPR001680 WD40_rpt SMART 429 469
IPR001680 WD40_rpt SMART 220 259
IPR001680 WD40_rpt SMART 472 511
IPR001680 WD40_rpt SMART 262 301
IPR001680 WD40_rpt SMART 303 342
IPR019775 WD40_repeat_CS ProSitePatterns 413 427
IPR001680 WD40_rpt ProSiteProfiles 269 301
IPR001680 WD40_rpt Pfam 474 511
IPR001680 WD40_rpt Pfam 266 301
IPR001680 WD40_rpt Pfam 393 426
IPR001680 WD40_rpt Pfam 234 259
IPR001680 WD40_rpt Pfam 305 342
IPR001680 WD40_rpt Pfam 353 384
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 386 522
IPR014906 PRP4-like Pfam 101 129
IPR019775 WD40_repeat_CS ProSitePatterns 329 343
IPR001680 WD40_rpt ProSiteProfiles 352 393
IPR001680 WD40_rpt ProSiteProfiles 394 435
IPR001680 WD40_rpt ProSiteProfiles 479 520
IPR014906 PRP4-like SMART 96 149

No CAZYmes available for this sequence

No external refs found!