LOC_Os03g25980.2

Description : polypyrimidine tract-binding protein 1

Gene families : OG_01_0012121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012121_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g25980.2
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g25980.2
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_105

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR034792	PTBPH1/PTBPH2_RRM1	CDD	19	99
IPR000504	RRM_dom	SMART	22	95
IPR000504	RRM_dom	SMART	249	319
IPR021790	PTBP1-like_RRM2	Pfam	244	323
IPR035979	RBD_domain_sf	SUPERFAMILY	120	219
IPR000504	RRM_dom	Pfam	25	74
IPR034794	PTBPH1/PTBPH2_RRM3	CDD	245	341
IPR035979	RBD_domain_sf	SUPERFAMILY	252	344
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	244	348
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	116	225
IPR000504	RRM_dom	ProSiteProfiles	21	99
IPR035979	RBD_domain_sf	SUPERFAMILY	7	109
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	11	115

No CAZYmes available for this sequence

External Links

No external refs found!