LOC_Os03g26960.1

Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein

Gene families : OG_01_0002360 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002360_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g26960.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g26960.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_276
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR041679	DNA2/NAM7-like_C	Pfam	1193	1383
IPR027417	P-loop_NTPase	Gene3D	822	1214
IPR026300	CWF11_fam	PANTHER	175	1444
IPR027417	P-loop_NTPase	SUPERFAMILY	876	1381
IPR041679	DNA2/NAM7-like_C	CDD	1218	1400
IPR027417	P-loop_NTPase	Gene3D	1216	1407
IPR041677	DNA2/NAM7_AAA_11	Pfam	895	1184
IPR045055	DNA2/NAM7-like	PANTHER	175	1444
IPR026300	CWF11_fam	PIRSF	37	1580
IPR032174	Aquarius_N	Pfam	51	883

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g26960.1

Expression Profile

Co-expression Networks

Functional Annotation