LOC_Os03g43850.1

Description : recA DNA recombination family protein

Gene families : OG_01_0012797 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012797_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g43850.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g43850.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_141

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003697	single-stranded DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	ISM	GOs from InterProScan
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013765	DNA_recomb/repair_RecA	Pfam	72	334
IPR027417	P-loop_NTPase	SUPERFAMILY	70	333
IPR027417	P-loop_NTPase	Gene3D	93	333
IPR020587	RecA_monomer-monomer_interface	ProSiteProfiles	263	338
IPR023400	RecA_C_sf	SUPERFAMILY	334	391
IPR020584	DNA_recomb/repair_RecA_CS	ProSitePatterns	277	285
IPR020588	RecA_ATP-bd	ProSiteProfiles	100	258
IPR013765	DNA_recomb/repair_RecA	PRINTS	191	220
IPR013765	DNA_recomb/repair_RecA	PRINTS	309	338
IPR013765	DNA_recomb/repair_RecA	PRINTS	157	186
IPR013765	DNA_recomb/repair_RecA	PRINTS	229	258
IPR013765	DNA_recomb/repair_RecA	PRINTS	274	302
IPR013765	DNA_recomb/repair_RecA	PRINTS	363	380
IPR013765	DNA_recomb/repair_RecA	CDD	69	392
IPR013765	DNA_recomb/repair_RecA	PANTHER	67	407
IPR013765	DNA_recomb/repair_RecA	Hamap	70	395
IPR003593	AAA+_ATPase	SMART	121	292
IPR013765	DNA_recomb/repair_RecA	TIGRFAM	69	389

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os03g43850.1

Expression Profile

Co-expression Networks

Functional Annotation