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  5. LOC_Os03g43890.1

LOC_Os03g43890.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0016263 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016263_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g43890.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g43890.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_85


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR020472 G-protein_beta_WD-40_rep PRINTS 198 212
IPR020472 G-protein_beta_WD-40_rep PRINTS 394 408
IPR020472 G-protein_beta_WD-40_rep PRINTS 293 307
IPR001680 WD40_rpt ProSiteProfiles 374 408
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 6 426
IPR022052 Histone-bd_RBBP4_N Pfam 23 92
IPR001680 WD40_rpt Pfam 224 260
IPR001680 WD40_rpt Pfam 314 350
IPR001680 WD40_rpt Pfam 178 211
IPR001680 WD40_rpt Pfam 371 406
IPR001680 WD40_rpt Pfam 268 306
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 117 412
IPR019775 WD40_repeat_CS ProSitePatterns 198 212
IPR001680 WD40_rpt ProSiteProfiles 178 220
IPR001680 WD40_rpt ProSiteProfiles 273 308
IPR001680 WD40_rpt ProSiteProfiles 317 359
IPR001680 WD40_rpt SMART 367 407
IPR001680 WD40_rpt SMART 171 211
IPR001680 WD40_rpt SMART 266 306
IPR001680 WD40_rpt SMART 310 350
IPR001680 WD40_rpt SMART 119 158
IPR001680 WD40_rpt SMART 220 260

No CAZYmes available for this sequence

No external refs found!