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  5. LOC_Os03g44440.1

LOC_Os03g44440.1


Description : cyclic nucleotide gated channel 9


Gene families : OG_01_0004690 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004690_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g44440.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g44440.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_135


Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006811 monoatomic ion transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR005821 Ion_trans_dom Pfam 93 416
IPR014710 RmlC-like_jellyroll Gene3D 487 607
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 418 609
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 625 654
IPR000595 cNMP-bd_dom CDD 489 620
IPR000595 cNMP-bd_dom SMART 489 620
IPR000595 cNMP-bd_dom ProSiteProfiles 489 619

No CAZYmes available for this sequence

No external refs found!