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  5. LOC_Os03g45920.1

LOC_Os03g45920.1


Description : tubulin beta chain 2


Gene families : OG_01_0000146 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000146_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g45920.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g45920.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_49
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_125


Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005200 structural constituent of cytoskeleton ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
CC GO:0005874 microtubule ISM GOs from InterProScan
BP GO:0007017 microtubule-based process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom SMART 246 383
IPR036525 Tubulin/FtsZ_GTPase_sf SUPERFAMILY 1 243
IPR017975 Tubulin_CS ProSitePatterns 140 146
IPR013838 Beta-tubulin_BS ProSitePatterns 1 4
IPR002453 Beta_tubulin PRINTS 347 370
IPR002453 Beta_tubulin PRINTS 377 388
IPR002453 Beta_tubulin PRINTS 329 343
IPR002453 Beta_tubulin PRINTS 412 430
IPR002453 Beta_tubulin PRINTS 230 239
IPR002453 Beta_tubulin PRINTS 245 258
IPR002453 Beta_tubulin PRINTS 265 281
IPR002453 Beta_tubulin PRINTS 88 99
IPR002453 Beta_tubulin PRINTS 212 224
IPR002453 Beta_tubulin PRINTS 108 126
IPR002453 Beta_tubulin PRINTS 311 329
IPR002453 Beta_tubulin PRINTS 41 58
IPR002453 Beta_tubulin PRINTS 152 164
IPR000217 Tubulin PRINTS 10 30
IPR000217 Tubulin PRINTS 132 150
IPR000217 Tubulin PRINTS 51 70
IPR000217 Tubulin PRINTS 93 104
IPR000217 Tubulin PRINTS 190 210
IPR000217 Tubulin PRINTS 106 130
IPR000217 Tubulin PRINTS 176 189
IPR000217 Tubulin PRINTS 370 398
IPR000217 Tubulin PRINTS 151 172
IPR008280 Tub_FtsZ_C SUPERFAMILY 244 429
IPR003008 Tubulin_FtsZ_GTPase Pfam 3 211
IPR000217 Tubulin PANTHER 1 439
IPR023123 Tubulin_C Gene3D 374 430
IPR036525 Tubulin/FtsZ_GTPase_sf Gene3D 1 262
IPR037103 Tubulin/FtsZ-like_C Gene3D 263 373
IPR018316 Tubulin/FtsZ_2-layer-sand-dom Pfam 261 382
IPR003008 Tubulin_FtsZ_GTPase SMART 47 244

No CAZYmes available for this sequence

No external refs found!