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  5. Sevir.4G149500.1

Sevir.4G149500.1


Description : SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related


Gene families : OG_01_0040824 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0040824_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G149500.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G149500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_30
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_85


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
MF GO:0061630 ubiquitin protein ligase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007527 Znf_SWIM Pfam 72 100
IPR001841 Znf_RING ProSiteProfiles 174 230
IPR039903 Zswim2 PANTHER 28 256
IPR013083 Znf_RING/FYVE/PHD Gene3D 160 249
IPR007527 Znf_SWIM ProSiteProfiles 72 102

No CAZYmes available for this sequence

No external refs found!