LOC_Os03g47800.1

Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Gene families : OG_01_0007533 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007533_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g47800.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g47800.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_378
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_184

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000504	RRM_dom	Pfam	9	78
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	2	112
IPR000504	RRM_dom	SMART	8	81
IPR001878	Znf_CCHC	Pfam	115	131
IPR001878	Znf_CCHC	ProSiteProfiles	116	131
IPR036875	Znf_CCHC_sf	SUPERFAMILY	104	134
IPR035979	RBD_domain_sf	SUPERFAMILY	5	113
IPR000504	RRM_dom	ProSiteProfiles	7	85
IPR001878	Znf_CCHC	SMART	115	131

No CAZYmes available for this sequence

External Links

No external refs found!