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  5. LOC_Os03g48090.1

LOC_Os03g48090.1


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0005066 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005066_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g48090.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g48090.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_204


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 60 102
IPR001680 WD40_rpt Pfam 317 347
IPR001680 WD40_rpt Pfam 102 135
IPR001680 WD40_rpt Pfam 268 306
IPR001680 WD40_rpt Pfam 226 262
IPR001680 WD40_rpt Pfam 184 219
IPR001680 WD40_rpt Pfam 351 389
IPR001680 WD40_rpt Pfam 141 177
IPR020472 G-protein_beta_WD-40_rep PRINTS 293 307
IPR020472 G-protein_beta_WD-40_rep PRINTS 122 136
IPR020472 G-protein_beta_WD-40_rep PRINTS 334 348
IPR001680 WD40_rpt ProSiteProfiles 357 394
IPR001680 WD40_rpt ProSiteProfiles 315 356
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 51 392
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 58 385
IPR001680 WD40_rpt SMART 309 347
IPR001680 WD40_rpt SMART 350 389
IPR001680 WD40_rpt SMART 222 264
IPR001680 WD40_rpt SMART 267 306
IPR001680 WD40_rpt SMART 180 219
IPR001680 WD40_rpt SMART 138 177
IPR001680 WD40_rpt SMART 96 135
IPR001680 WD40_rpt SMART 53 93
IPR001680 WD40_rpt ProSiteProfiles 232 273
IPR019775 WD40_repeat_CS ProSitePatterns 293 307
IPR001680 WD40_rpt ProSiteProfiles 145 186
IPR001680 WD40_rpt ProSiteProfiles 187 228
IPR001680 WD40_rpt ProSiteProfiles 274 307
IPR001680 WD40_rpt ProSiteProfiles 103 144

No CAZYmes available for this sequence

No external refs found!