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  5. LOC_Os03g49200.1

LOC_Os03g49200.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0019917 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019917_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g49200.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g49200.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_199
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_111


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt SMART 358 398
IPR001680 WD40_rpt SMART 221 261
IPR001680 WD40_rpt SMART 50 92
IPR001680 WD40_rpt SMART 274 313
IPR001680 WD40_rpt SMART 321 354
IPR001680 WD40_rpt SMART 150 190
IPR001680 WD40_rpt SMART 108 147
IPR001680 WD40_rpt ProSiteProfiles 333 356
IPR019775 WD40_repeat_CS ProSitePatterns 248 262
IPR001680 WD40_rpt ProSiteProfiles 365 400
IPR019775 WD40_repeat_CS ProSitePatterns 385 399
IPR001680 WD40_rpt Pfam 233 261
IPR001680 WD40_rpt Pfam 115 147
IPR001680 WD40_rpt Pfam 152 190
IPR001680 WD40_rpt Pfam 330 353
IPR001680 WD40_rpt Pfam 364 398
IPR001680 WD40_rpt ProSiteProfiles 157 192
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 52 199
IPR001680 WD40_rpt ProSiteProfiles 115 156
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 200 313
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 76 413
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 330 553
IPR020472 G-protein_beta_WD-40_rep PRINTS 248 262
IPR020472 G-protein_beta_WD-40_rep PRINTS 177 191
IPR020472 G-protein_beta_WD-40_rep PRINTS 134 148

No CAZYmes available for this sequence

No external refs found!