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  5. LOC_Os03g49250.1

LOC_Os03g49250.1


Description : peptidoglycan-binding LysM domain-containing protein


Gene families : OG_01_0014434 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014434_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g49250.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g49250.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_75
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_197


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001810 F-box_dom SMART 8 48
IPR036779 LysM_dom_sf SUPERFAMILY 79 123
IPR018392 LysM_dom ProSiteProfiles 78 122
IPR036047 F-box-like_dom_sf SUPERFAMILY 6 72
IPR018392 LysM_dom CDD 79 122
IPR045030 LYSM1-4 PANTHER 5 220
IPR001810 F-box_dom Pfam 8 36
IPR018392 LysM_dom Pfam 80 123
IPR036779 LysM_dom_sf Gene3D 73 129
IPR018392 LysM_dom SMART 79 123
IPR001810 F-box_dom ProSiteProfiles 2 48
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM50 40 223 6e-10 80 123
No external refs found!