Sevir.4G152200.1

Description : nuclear poly(a) polymerase

Gene families : OG_01_0000816 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000816_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G152200.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G152200.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_50

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	ISM	GOs from InterProScan
BP	GO:0031123	RNA 3'-end processing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043631	obsolete RNA polyadenylation	ISM	GOs from InterProScan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002934	Polymerase_NTP_transf_dom	Pfam	85	158
IPR007010	PolA_pol_RNA-bd_dom	Pfam	358	419
IPR007010	PolA_pol_RNA-bd_dom	Pfam	421	492
IPR011068	NuclTrfase_I-like_C	SUPERFAMILY	357	484
IPR014492	PolyA_polymerase	PIRSF	2	600
IPR043519	NT_sf	Gene3D	44	200
IPR043519	NT_sf	SUPERFAMILY	8	204
IPR007012	PolA_pol_cen_dom	Pfam	12	356

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.4G152200.1

Expression Profile

Co-expression Networks

Functional Annotation