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  5. LOC_Os03g51220.1

LOC_Os03g51220.1


Description : DNA-binding family protein


Gene families : OG_01_0001876 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001876_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g51220.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g51220.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_272
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR017930 Myb_dom Pfam 357 399
IPR043145 Znf_ZZ_sf Gene3D 291 344
IPR009057 Homeobox-like_sf SUPERFAMILY 138 220
IPR032451 SMARCC_C Pfam 801 876
IPR000433 Znf_ZZ ProSitePatterns 301 327
IPR000433 Znf_ZZ ProSiteProfiles 295 332
IPR001005 SANT/Myb ProSiteProfiles 357 400
IPR041984 Rsc8/Ssr1/Ssr2_ZZ CDD 299 343
IPR017930 Myb_dom ProSiteProfiles 357 404
IPR000433 Znf_ZZ Pfam 298 333
IPR009057 Homeobox-like_sf SUPERFAMILY 354 408
IPR001005 SANT/Myb SMART 354 402
IPR001005 SANT/Myb CDD 375 399
IPR007526 SWIRM Pfam 134 219
IPR007526 SWIRM ProSiteProfiles 131 228
IPR000433 Znf_ZZ SMART 295 339
IPR017884 SANT_dom ProSiteProfiles 353 404
IPR036388 WH-like_DNA-bd_sf Gene3D 137 221

No CAZYmes available for this sequence

No external refs found!