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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0010004 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010004_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g51840.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g51840.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_276 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_174 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 194 | 228 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 154 | 256 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 229 | 263 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 264 | 298 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 337 | 439 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 403 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 193 | 239 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 299 | 333 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 345 | 366 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 198 | 230 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 266 | 300 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 301 | 334 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 404 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 231 | 265 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 368 | 415 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 263 | 312 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 257 | 329 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 440 | 594 |
No CAZYmes available for this sequence
| No external refs found! |