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  5. LOC_Os03g52620.1

LOC_Os03g52620.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017182 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017182_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g52620.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g52620.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_353


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 323 352
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 285 319
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 250 284
IPR011990 TPR-like_helical_dom_sf Gene3D 314 383
IPR011990 TPR-like_helical_dom_sf Gene3D 227 302
IPR011990 TPR-like_helical_dom_sf Gene3D 109 226
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 167 201
IPR002885 Pentatricopeptide_rpt TIGRFAM 324 355
IPR002885 Pentatricopeptide_rpt TIGRFAM 170 196
IPR002885 Pentatricopeptide_rpt TIGRFAM 252 285
IPR002885 Pentatricopeptide_rpt TIGRFAM 287 317
IPR002885 Pentatricopeptide_rpt Pfam 249 293
IPR002885 Pentatricopeptide_rpt Pfam 166 217
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 321 355

No CAZYmes available for this sequence

No external refs found!