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  5. LOC_Os03g55100.1

LOC_Os03g55100.1


Description : Cyclic nucleotide-regulated ion channel family protein


Gene families : OG_01_0013399 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013399_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g55100.1 No neighbors in network
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g55100.1
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_179


Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity ISM GOs from InterProScan
BP GO:0006811 monoatomic ion transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR005821 Ion_trans_dom Pfam 128 451
IPR014710 RmlC-like_jellyroll Gene3D 531 649
IPR000595 cNMP-bd_dom CDD 533 646
IPR000595 cNMP-bd_dom SMART 533 659
IPR000595 cNMP-bd_dom Pfam 553 643
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 460 647
IPR000595 cNMP-bd_dom ProSiteProfiles 533 612

No CAZYmes available for this sequence

No external refs found!