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  5. LOC_Os03g55340.1

LOC_Os03g55340.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0002744 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002744_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g55340.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g55340.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_182


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 412 446
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 308 342
IPR002885 Pentatricopeptide_rpt Pfam 376 425
IPR002885 Pentatricopeptide_rpt Pfam 307 354
IPR002885 Pentatricopeptide_rpt Pfam 168 213
IPR011990 TPR-like_helical_dom_sf Gene3D 358 473
IPR011990 TPR-like_helical_dom_sf Gene3D 268 357
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 169 199
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 238 272
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 308 449
IPR002885 Pentatricopeptide_rpt Pfam 234 266
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 377 411
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 134 168
IPR002885 Pentatricopeptide_rpt TIGRFAM 240 273
IPR002885 Pentatricopeptide_rpt TIGRFAM 310 341
IPR002885 Pentatricopeptide_rpt TIGRFAM 380 412
IPR002885 Pentatricopeptide_rpt TIGRFAM 137 169
IPR002885 Pentatricopeptide_rpt TIGRFAM 414 446
IPR002885 Pentatricopeptide_rpt TIGRFAM 172 198
IPR002885 Pentatricopeptide_rpt TIGRFAM 346 372
IPR002885 Pentatricopeptide_rpt TIGRFAM 206 239
IPR002885 Pentatricopeptide_rpt TIGRFAM 275 309
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 203 237
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 343 373
IPR002885 Pentatricopeptide_rpt Pfam 137 166
IPR002885 Pentatricopeptide_rpt Pfam 276 305
IPR011990 TPR-like_helical_dom_sf Gene3D 37 198
IPR011990 TPR-like_helical_dom_sf Gene3D 199 267

No CAZYmes available for this sequence

No external refs found!