Sevir.4G159200.1

Description : Alpha amylase family protein

Gene families : OG_01_0006623 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006623_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G159200.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G159200.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_115

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0003844	1,4-alpha-glucan branching enzyme activity	ISM	GOs from InterProScan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005977	glycogen metabolic process	None	Extended
BP	GO:0005978	glycogen biosynthetic process	ISM	GOs from InterProScan
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006112	energy reserve metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015980	energy derivation by oxidation of organic compounds	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016758	hexosyltransferase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006047	Glyco_hydro_13_cat_dom	Pfam	437	509
IPR014756	Ig_E-set	SUPERFAMILY	128	196
IPR006048	A-amylase/branching_C	Pfam	808	897
IPR037439	Branching_enzy	PIRSF	41	907
IPR013783	Ig-like_fold	Gene3D	129	237
IPR013780	Glyco_hydro_b	Gene3D	805	902
IPR037439	Branching_enzy	PANTHER	58	898
IPR004193	Glyco_hydro_13_N	Pfam	134	197
IPR006047	Glyco_hydro_13_cat_dom	SMART	395	771
IPR013783	Ig-like_fold	Gene3D	344	396
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	350	802

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CBM48	76	912	3.5e-07	134	212

External Links

No external refs found!

Sevir.4G159200.1

Expression Profile

Co-expression Networks

Functional Annotation