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  5. LOC_Os03g60600.1

LOC_Os03g60600.1


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0006794 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006794_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g60600.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g60600.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_311
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_129


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 157 172
IPR001878 Znf_CCHC ProSiteProfiles 135 150
IPR036875 Znf_CCHC_sf SUPERFAMILY 219 263
IPR001878 Znf_CCHC Pfam 174 191
IPR001878 Znf_CCHC Pfam 226 241
IPR001878 Znf_CCHC Pfam 115 131
IPR001878 Znf_CCHC Pfam 135 150
IPR001878 Znf_CCHC Pfam 78 92
IPR001878 Znf_CCHC Pfam 156 172
IPR001878 Znf_CCHC Pfam 96 112
IPR001878 Znf_CCHC ProSiteProfiles 227 240
IPR001878 Znf_CCHC ProSiteProfiles 78 93
IPR036875 Znf_CCHC_sf SUPERFAMILY 113 151
IPR001878 Znf_CCHC ProSiteProfiles 116 131
IPR001878 Znf_CCHC ProSiteProfiles 176 191
IPR036875 Znf_CCHC_sf SUPERFAMILY 69 113
IPR036875 Znf_CCHC_sf SUPERFAMILY 152 192
IPR001878 Znf_CCHC SMART 134 150
IPR001878 Znf_CCHC SMART 226 242
IPR001878 Znf_CCHC SMART 245 261
IPR001878 Znf_CCHC SMART 156 172
IPR001878 Znf_CCHC SMART 115 131
IPR001878 Znf_CCHC SMART 77 93
IPR001878 Znf_CCHC SMART 194 210
IPR001878 Znf_CCHC SMART 175 191
IPR001878 Znf_CCHC SMART 96 112
IPR001878 Znf_CCHC ProSiteProfiles 246 261

No CAZYmes available for this sequence

No external refs found!