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  5. LOC_Os03g60690.1

LOC_Os03g60690.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0011853 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011853_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g60690.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g60690.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 295 342
IPR002885 Pentatricopeptide_rpt Pfam 195 233
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 194 228
IPR032867 DYW_dom Pfam 468 592
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 264 294
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 295 329
IPR002885 Pentatricopeptide_rpt Pfam 369 393
IPR011990 TPR-like_helical_dom_sf Gene3D 267 494
IPR011990 TPR-like_helical_dom_sf Gene3D 104 261
IPR002885 Pentatricopeptide_rpt TIGRFAM 196 229
IPR002885 Pentatricopeptide_rpt TIGRFAM 268 297
IPR002885 Pentatricopeptide_rpt TIGRFAM 297 330

No CAZYmes available for this sequence

No external refs found!