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Description : plastid transcriptionally active 2
Gene families : OG_01_0005005 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005005_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g60910.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g60910.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_320 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_152 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 494 | 524 |
| IPR002625 | Smr_dom | SMART | 714 | 803 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 173 | 207 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 250 | 284 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 530 | 564 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 320 | 354 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 308 | 627 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 412 | 471 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 355 | 385 |
| IPR002625 | Smr_dom | ProSiteProfiles | 717 | 806 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 603 | 630 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 288 | 320 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 392 | 425 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 533 | 566 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 358 | 383 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 176 | 208 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 497 | 522 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 497 | 522 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 533 | 561 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 603 | 630 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 389 | 423 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 491 | 592 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 79 | 225 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 285 | 319 |
| IPR033443 | PPR_long | Pfam | 183 | 361 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 228 | 385 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 593 | 717 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 386 | 490 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 600 | 634 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 424 | 458 |
No CAZYmes available for this sequence
| No external refs found! |