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  5. LOC_Os03g61110.1

LOC_Os03g61110.1


Description : RNA recognition motif (RRM)-containing protein


Gene families : OG_01_0011249 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011249_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g61110.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g61110.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_126


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 29 118
IPR000504 RRM_dom Pfam 38 106
IPR000571 Znf_CCCH ProSiteProfiles 130 157
IPR000571 Znf_CCCH Pfam 135 155
IPR045844 RRM_Ist3-like CDD 27 113
IPR000504 RRM_dom ProSiteProfiles 36 114
IPR000571 Znf_CCCH SMART 132 156
IPR000504 RRM_dom SMART 37 110
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 27 131

No CAZYmes available for this sequence

No external refs found!